If you love bagels but crave a healthier, protein-packed twist on this beloved breakfast staple, then you are going to adore this Greek Yogurt Protein Bagels Recipe. Combining the creaminess and tang of full-fat Greek yogurt with simple pantry staples, these bagels deliver a soft yet chewy texture that feels indulgent without the guilt. They bake up golden and inviting, perfect whether you enjoy them fresh from the oven or toasted later. The best part is how straightforward the ingredients and steps are, making this recipe a wonderful option for a weekend baking project or a special homemade treat any day of the week.

Ingredients You’ll Need
These ingredients are easy to find but essential to achieving the perfect balance between structure, flavor, and nutrition in your bagels. Each one plays its role: the all-purpose flour gives body, Greek yogurt infuses moisture and protein, baking powder lifts the dough, and a touch of sugar and salt rounds out the flavor beautifully.
- 2 cups all-purpose flour: Provides the perfect base for structure and chewiness in the bagels.
- 1 ¾ cups full-fat Greek yogurt: Adds moisture, protein, and a delicious tangy flavor that distinguishes these bagels.
- 4 teaspoons baking powder: Acts as a leavening agent to give the bagels a tender crumb with a subtle lift.
- 1 ½ teaspoons sugar: Just enough sweetness to enhance flavor without overpowering.
- ¾ teaspoon sea salt: Balances the flavors and brings out the richness of the dough.
- 1 egg: Used for an egg wash to create a gorgeous golden crust on top.
- Optional toppings (everything bagel seasoning, poppy seeds, sesame seeds, flakey sea salt): Elevate your bagels with texture and flavor bursts.
How to Make Greek Yogurt Protein Bagels Recipe
Step 1: Preheat and Mix Dry Ingredients
Start by heating your oven to 375°F so it’s ready when your dough is shaped. In a large bowl, combine the flour, baking powder, sugar, and sea salt with a whisk or fork—this ensures the leaveners and seasonings are evenly distributed, which is key to consistent texture and flavor.
Step 2: Add Greek Yogurt and Form Dough
Next, stir in that creamy Greek yogurt. The mixture will be a bit crumbly or clumpy at first, but gently pull it together into one ball. If it feels dry, don’t hesitate to add a teaspoon of water or a little extra yogurt. This step is where the magic happens—the yogurt hydrates the flour and brings protein while keeping things moist.
Step 3: Knead the Dough
Transfer your dough onto a lightly floured surface and knead gently about 10 to 15 times. This brief kneading develops just enough gluten for structure without making the bagels tough. After kneading, divide the dough evenly into six pieces, either cutting or pulling them apart by hand.
Step 4: Shape the Bagels
Roll each piece into a rope about an inch thick or slightly thinner, then form a circle and press the ends together firmly. Placing your bagels on a parchment-lined baking sheet helps prevent sticking and keeps cleanup easy. This shaping step ensures your bagels bake evenly and have that classic ring with a full hole.
Step 5: Egg Wash and Add Toppings
Whisk your egg and brush it all over the bagels generously, getting into every nook and cranny, including the center hole. This egg wash creates a beautiful golden-brown finish during baking. Now sprinkle on any optional toppings you love—everything bagel seasoning or sesame seeds add wonderful crunch and flavor.
Step 6: Bake to Perfection
Bake your bagels for 19 to 23 minutes, watching carefully for a golden brown color. These bagels can dry out if left too long, so it’s best to pull them out as soon as they look perfectly baked. Let them cool slightly or dive right in warm for an irresistible treat!
How to Serve Greek Yogurt Protein Bagels Recipe
Garnishes
These bagels are a gorgeous canvas for your favorite spreads. A schmear of cream cheese or avocado works beautifully, while hummus or a nut butter offers a protein boost. Fresh herbs or thinly sliced radishes add a bright, fresh note that pairs wonderfully with the bagel’s subtle tang.
Side Dishes
Pair your bagels with a side of fresh fruit or a simple green salad for a well-rounded breakfast or lunch. A bowl of mixed berries or a crisp cucumber salad complements the hearty texture of these protein-packed bagels perfectly.
Creative Ways to Present
Try slicing your bagels and layering them with smoked salmon, tomato slices, and capers for an elegant brunch platter. You could also create mini bagel sandwiches with turkey and spinach for a portable protein-rich snack that keeps you energized.
Make Ahead and Storage
Storing Leftovers
If you have leftovers, store the bagels in an airtight container or resealable bag at room temperature for up to two days. This keeps them soft and fresh without drying out. To maintain their delicious texture, avoid refrigerating them uncovered.
Freezing
You can freeze these bagels either before baking or after. For raw dough, shape the bagels and freeze on a tray, then transfer to a bag once solid. For baked bagels, wrap individually in plastic wrap and freeze in a zip-top bag. They’ll keep for up to two months.
Reheating
To reheat, thaw frozen bagels at room temperature or overnight in the fridge, then toast or warm in a 350°F oven for 5 to 7 minutes. This brings back that fresh-baked aroma and restores a perfectly crisp crust with a tender inside.
FAQs
Can I use low-fat Greek yogurt instead of full-fat?
Yes, you can substitute low-fat Greek yogurt, but full-fat yogurt contributes to a richer flavor and moister texture that enhances the overall experience of the bagels.
Do these bagels taste like traditional boiled bagels?
While these bagels are deliciously chewy and flavorful, they do not have the same dense crust that comes from boiling traditional bagels. The Greek Yogurt Protein Bagels Recipe offers a quicker, easier alternative with great texture and taste.
Can I add mix-ins like herbs or dried fruit to the dough?
Absolutely! Adding fresh herbs, sun-dried tomatoes, or even dried cranberries can add exciting flavor twists. Just fold them in gently during the dough formation step.
How can I make these bagels gluten-free?
Try replacing the all-purpose flour with a gluten-free baking blend that works well for breads. Keep the amount the same and monitor the dough’s consistency, adding a little extra yogurt or water if needed.
Are these bagels suitable for meal prep?
Definitely. Thanks to the protein from Greek yogurt and their satisfying texture, these bagels make for convenient, healthy breakfasts or snacks when prepped in advance.
Final Thoughts
There is something truly special about making your own bagels at home, especially when they are wholesome and packed with protein like in this Greek Yogurt Protein Bagels Recipe. They prove that simple ingredients can deliver something extraordinary. Give this recipe a try and enjoy the warm, comforting taste of freshly baked bagels that you crafted yourself—your mornings will thank you!
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Greek Yogurt Protein Bagels Recipe
- Prep Time: 15 minutes
- Cook Time: 23 minutes
- Total Time: 38 minutes
- Yield: 6 bagels
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Low Fat
Description
These Greek Yogurt Protein Bagels are a quick and easy homemade treat packed with protein and tangy flavor from full-fat Greek yogurt. With a tender, chewy texture and customizable toppings like everything bagel seasoning or sesame seeds, these bagels are perfect for breakfast or a nutritious snack. Ready in just 40 minutes, they’re a healthier alternative to traditional bagels with less fuss and wholesome ingredients.
Ingredients
Dry Ingredients
- 2 cups all-purpose flour
- 4 teaspoons baking powder
- 1 ½ teaspoons sugar
- ¾ teaspoon sea salt
Wet Ingredients
- 1 ¾ cups full-fat Greek yogurt
- 1 egg (for egg wash)
Optional Toppings
- Everything bagel seasoning
- Poppy seeds
- Sesame seeds
- Flaky sea salt
Instructions
- Preheat Oven: Preheat your oven to 375°F (190°C) to prepare for baking your bagels.
- Mix Dry Ingredients: In a large mixing bowl, combine the all-purpose flour, baking powder, sugar, and sea salt. Use a whisk or fork to blend these ingredients thoroughly.
- Add Greek Yogurt: Add the full-fat Greek yogurt to the dry ingredients. Mix well until the mixture forms somewhat crumbly or clumpy dough. If the dough seems too dry, add a teaspoon of water or a small spoonful more Greek yogurt to bring it together.
- Knead Dough: Transfer the dough to a lightly floured surface and knead about 10-15 times until it comes together smoothly.
- Divide Dough: Divide the dough into 6 equal pieces by either cutting or pulling apart.
- Shape Bagels: Roll each dough piece into a thin rope about 1 inch in diameter, then shape it into a circle, pressing the ends together firmly. Place the formed bagels onto a parchment-lined baking sheet.
- Apply Egg Wash: Whisk the egg in a small bowl to make an egg wash. Brush it evenly over each bagel, including the center hole, to help them brown nicely during baking.
- Add Toppings: Sprinkle your choice of optional toppings such as everything bagel seasoning, poppy seeds, sesame seeds, or flaky sea salt over the egg-washed bagels.
- Bake: Bake the bagels in the preheated oven for 19 to 23 minutes or until they turn golden brown. Avoid overcooking to keep the texture tender.
- Cool and Serve: Let the bagels cool slightly before serving, or enjoy them warm for a delightful treat.
Notes
- For a moister dough, add an extra tablespoon of Greek yogurt or a teaspoon of water during mixing.
- Make sure to brush egg wash thoroughly to get an even golden crust and help toppings stick well.
- Customize toppings as desired or leave plain for a simple flavor.
- These bagels are best eaten fresh but can be stored in an airtight container for up to 2 days.
- Reheat by toasting or warming in an oven to regain crispiness.

